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General Characteristics of Bacteroidetes/Chlorobi Genomes
Genome Size (Mb)**
GC Content (%)
Porphyromonas gingivalis W83#
Bacteroides fragilis NCTC 9343#
Bacteroides fragilis YCH46#
Bacteroides thetaiotaomicron VPI-5482#
Gramella forsetii KT0803#
Flavobacteriales bacterium HTCC2170*
Flavobacterium johnsoniae UW101*
Flavobacterium sp. MED217*
Cellulophaga sp. MED134*
Croceibacter atlanticus HTCC2559*
Polaribacter irgensii 23-P*
Psychroflexus torquis ATCC 700755*
Robiginitalea biformata HTCC2501*
Tenacibaculum sp. MED152*
Cytophaga hutchinsonii ATCC 33406#
Salinibacter ruber DSM 13855#
Chlorobium chlorochromatii CaD3#
Chlorobium limicola DSM 245*
Chlorobium phaeobacteroides DSM 266*
Chlorobaculum tepidum formerly Chlorobium tepidum TLS#
Chlorobium luteolum formerly Pelodictyon luteolum DSM 273#
Chlorobium clathratiforme formerly Pelodictyon phaeoclathratiforme BU-1*
Prosthecochloris aestuarii DSM 271*
Chlorobium phaeovibrioides formerly Prosthecochloris vibrioformis DSM 265*
#Indicates a completely sequenced genome. The references to the published genomes are provided. For others that are fully sequenced but not published, accession numbers for the genomes are given.
* Indicates that these genomes are at draft assembly stages. The information regarding genome sizes etc. in these cases have been obtained from the NCBI microbial sequence database.
The revised names for a number of Chlorobi species are as proposed in Ref. 45.
# The sequences marked 'a' are being sequenced by Gordon and Betty Moore Foundation Marine Biotechnology Intiative; DOE-JGE, indicates Department of Energy Joint Genome Institute. For some of the completed genomes, which are not published, their accession numbers are provided.
In the past few years, complete genomes of several Bacteroidetes
and Chlorobi species have become available (see Table 1).
Additionally, sequencing of genomes for many other
Bacteroidetes/Chlorobi species is at different stages of completion
(see Table 1), but considerable sequence information for these
genomes is available in the NCBI database. .
Table 1 lists some characteristics of various Bacteroidetes and
Chlorobi genomes that have been completely sequenced as well as for
many others that are currently being sequenced.
Additionally, sequence information for a large number of
genes/proteins from Prevotella intermedia 17 and Prevotella
ruminicola 23, which belong to this order is available in the in
NCBI database (see Table 1).
However, sequence information for a large number of other
Flavobacteriales species, whose genomes are being sequenced (see
Table 1), is available in the NCBI database.
Twenty-six of these proteins are present in all Flavobacteriales
species listed in Table 1, whereas the remaining 12 are missing in
only one of the species.
In addition to the 3 completely sequenced genomes, homologs of
these proteins are also present in six others Chlorobi species (see
Table 1), for which sequence information is available in the NCBI
Gupta, Radhey S; Lorenzini, EmilyJournal: BMC Evolutionary Biology
Issue 1DOI: 10.1186/1471-2148-7-71Published: 2007-12-01Institution(s):
This table is from the article titled "Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species"
(from BMC Evolutionary Biology) which is copyrighted by Gupta and Lorenzini. For more information on the
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